No. words: 1625; after pruning: 1599


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.5 (1,1:774)  743  0.00 0.13 0.13  UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1        1   772 (42)  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   (36)   775     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   811 
   40    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1     4 
   44  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   768 
   60    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1    24 
  124  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   687 
  132    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1    96 
  136  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   675 
  156    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1   120 
  160  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   651 
  196    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1   160 
  200  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   611 
  248    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1   212 
  252  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   559 
  492    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1   456 
  496  C UCW052_A08_BF201102Td09P001G05P022C071F1_064.ab1   315 
  796    UCW051_A08_BF201102Td09P001G05P022C071R1_064.ab1   760 
Contig length: old 850, new 850

Contig length: old 850, new 850
New start: 0