No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:784)  758  0.00 0.13 0.13  UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1        1   785 (31)  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   (40)   785     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   825 
   59    UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1    18 
  103  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   723 
  107    UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1    66 
  139  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   687 
  143    UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1   102 
  163  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   663 
  691    UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1   650 
  699  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   127 
  711    UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1   670 
  715  C UCW052_B08_BF201102Td10P001G05P022C071F1_062.ab1   111 
  807    UCW051_B08_BF201102Td10P001G05P022C071R1_062.ab1   766 
Contig length: old 856, new 857

Contig length: old 857, new 857
New start: 0