No. words: 1716; after pruning: 1690


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:1043)  651  0.00 0.00 0.00  UCW002F_E02_BF201102Tu02P002G05G111F1_007.ab1      189   860 (0)  C UCW002R_E02_BF201102Tu02P002G05G111R1_007.ab1   (0)   856   185 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    UCW002F_E02_BF201102Tu02P002G05G111F1_007.ab1     1 
  420  C UCW002R_E02_BF201102Tu02P002G05G111R1_007.ab1   625 
  424    UCW002F_E02_BF201102Tu02P002G05G111F1_007.ab1   424 
  444  C UCW002R_E02_BF201102Tu02P002G05G111R1_007.ab1   601 
  448    UCW002F_E02_BF201102Tu02P002G05G111F1_007.ab1   448 
  476  C UCW002R_E02_BF201102Tu02P002G05G111R1_007.ab1   569 
  480    UCW002F_E02_BF201102Tu02P002G05G111F1_007.ab1   480 
  484  C UCW002R_E02_BF201102Tu02P002G05G111R1_007.ab1   561 
  496    UCW002F_E02_BF201102Tu02P002G05G111F1_007.ab1   496 
  500  C UCW002R_E02_BF201102Tu02P002G05G111R1_007.ab1   545 
Contig length: old 1044, new 1044

Contig length: old 1044, new 1044
New start: 0