No. words: 1608; after pruning: 1582


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:797)  749  0.63 0.13 0.00  UCW005F_A02_BF201348As01P002E02E081F1_005.ab1        1   788 (0)  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   (22)   798    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   820 
   26    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1     4 
  151  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   670 
  167    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   144 
  213  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   608 
  221    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   198 
  246  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   575 
  266    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   243 
  274  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   547 
  286    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   263 
  330  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   491 
  334    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   311 
  342  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   479 
  346    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   323 
  354  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   467 
  366    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   343 
  378  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   443 
  394    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   371 
  406  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   415 
  414    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   391 
  430  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   391 
  434    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   411 
  458  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   363 
  462    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   439 
  478  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   343 
  482    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   459 
  486  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   335 
  498    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   475 
  506  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   315 
  526    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   503 
  530  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   291 
  694    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   671 
  698  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   123 
  706    UCW005F_A02_BF201348As01P002E02E081F1_005.ab1   683 
  710  C UCW005R_A02_BF201348As01P002E02E081R1_005.ab1   111 
Contig length: old 820, new 820

Contig length: old 820, new 820
New start: 0