No. words: 1612; after pruning: 1572


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:842)  738  0.13 0.00 0.13  UCW005F_C02_BF201348At01P002E02E081F1_006.ab1       57   826 (0)  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   (0)   786    18 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1     1 
  310  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   534 
  314    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   314 
  382  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   462 
  390    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   390 
  398  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   446 
  402    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   402 
  406  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   438 
  410    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   410 
  414  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   430 
  418    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   418 
  426  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   418 
  442    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   442 
  446  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   398 
  470    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   470 
  478  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   366 
  502    UCW005F_C02_BF201348At01P002E02E081F1_006.ab1   502 
  506  C UCW005R_C02_BF201348At01P002E02E081R1_006.ab1   338 
Contig length: old 843, new 843

Contig length: old 843, new 843
New start: 0