No. words: 1686; after pruning: 1631


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:934)  701  0.67 0.27 0.13  UCW005F_A01_BF201348Ld01P002E02E081F1_001.ab1      119   869 (0)  C UCW005R_A01_BF201348Ld01P002E02E081R1_001.ab1   (0)   817    66 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1    UCW005F_A01_BF201348Ld01P002E02E081F1_001.ab1     1 
  389  C UCW005R_A01_BF201348Ld01P002E02E081R1_001.ab1   547 
  401    UCW005F_A01_BF201348Ld01P002E02E081F1_001.ab1   401 
  457  C UCW005R_A01_BF201348Ld01P002E02E081R1_001.ab1   479 
  469    UCW005F_A01_BF201348Ld01P002E02E081F1_001.ab1   469 
  473  C UCW005R_A01_BF201348Ld01P002E02E081R1_001.ab1   463 
Contig length: old 935, new 935

Contig length: old 935, new 935
New start: 0