No. words: 1182; after pruning: 1115


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:798)  346  0.55 0.00 0.55  UCW005F_E01_BF201348Ld05P002E02E081F1_003.ab1        1   365 (0)  C UCW005R_E01_BF201348Ld05P002E02E081R1_003.ab1   (19)   798   436 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C UCW005R_E01_BF201348Ld05P002E02E081R1_003.ab1   817 
   29    UCW005F_E01_BF201348Ld05P002E02E081F1_003.ab1    10 
  268  C UCW005R_E01_BF201348Ld05P002E02E081R1_003.ab1   550 
  302    UCW005F_E01_BF201348Ld05P002E02E081F1_003.ab1   285 
  310  C UCW005R_E01_BF201348Ld05P002E02E081R1_003.ab1   508 
  318    UCW005F_E01_BF201348Ld05P002E02E081F1_003.ab1   301 
  334  C UCW005R_E01_BF201348Ld05P002E02E081R1_003.ab1   484 
Contig length: old 817, new 817

Contig length: old 817, new 817
New start: 0