No. words: 1357; after pruning: 1331


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:736)  608  0.32 0.16 0.00  UCW004F_A04_BF473658As01P002C01C071F1_021.ab1       40   658 (0)  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   (0)   699    80 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1     1 
   98  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   641 
  102    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   102 
  254  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   485 
  262    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   262 
  378  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   361 
  394    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   394 
  440  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   299 
  456    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   456 
  472  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   267 
  504    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   504 
  512  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   227 
  532    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   532 
  536  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   203 
  576    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   576 
  580  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   159 
  604    UCW004F_A04_BF473658As01P002C01C071F1_021.ab1   604 
  608  C UCW004R_A04_BF473658As01P002C01C071R1_021.ab1   131 
Contig length: old 737, new 738

Contig length: old 738, new 738
New start: 0