No. words: 1362; after pruning: 1322


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.9 (1,1:665)  617  1.36 0.45 0.30  UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1        3   666 (29)  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   (2)   665     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   667 
   13    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1    12 
   17  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   651 
   46    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1    44 
   50  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   618 
   64    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1    62 
   68  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   600 
   80    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1    78 
   89  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   579 
  109    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   107 
  113  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   555 
  177    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   175 
  185  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   483 
  205    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   203 
  229  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   439 
  237    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   235 
  249  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   419 
  253    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   251 
  261  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   407 
  265    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   263 
  273  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   395 
  305    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   303 
  309  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   359 
  317    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   315 
  321  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   347 
  357    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   355 
  369  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   299 
  397    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   395 
  417  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   251 
  437    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   435 
  449  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   219 
  465    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   463 
  469  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1   199 
  473    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   471 
  608  C UCW004R_A03_BF473658Ld01P002C01C071R1_017.ab1    60 
  655    UCW004F_A03_BF473658Ld01P002C01C071F1_017.ab1   654 
Contig length: old 696, new 696

Contig length: old 696, new 697
New start: 0 
S Change at: 613; seg lengths: entry 1, contig 1
S Change at: 642; seg lengths: entry 1, contig 1
I Change at: 653; seg lengths: entry 1, contig 0