No. words: 1338; after pruning: 1298


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:622)  621  0.16 0.00 0.00  UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1        1   623 (45)  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1   (47)   623     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1   670 
   55    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1     8 
   83  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1   588 
   91    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1    44 
   99  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1   572 
  575    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1   528 
  583  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1    88 
  607    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1   560 
  615  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1    56 
  632    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1   585 
  636  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1    35 
  648    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1   601 
  652  C UCW018R_A07_BF473658Ld01P014E06P014E121R1_063.ab1    19 
  664    UCW018F_A07_BF473658Ld01P014E06P014E121F1_063.ab1   617 
Contig length: old 715, new 715

Contig length: old 715, new 715
New start: 0