No. words: 1332; after pruning: 1292


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.5 (1,1:626)  556  3.04 0.16 0.32  UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1        1   626 (37)  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   (44)   625     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   669 
  229    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   187 
  237  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   433 
  261    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   219 
  265  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   405 
  273    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   231 
  277  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   393 
  305    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   263 
  313  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   357 
  321    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   279 
  329  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   341 
  333    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   291 
  345  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   325 
  349    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   307 
  361  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   309 
  365    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   323 
  377  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   293 
  381    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   339 
  385  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   285 
  397    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   355 
  401  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   269 
  405    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   363 
  409  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   261 
  429    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   387 
  433  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   237 
  445    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   403 
  457  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1   213 
  465    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   423 
  629  C UCW004R_B03_BF473658Ld02P002C01C071R1_025.ab1    41 
  649    UCW004F_B03_BF473658Ld02P002C01C071F1_025.ab1   606 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0 
S Change at: 88; seg lengths: entry 1, contig 1