No. words: 1300; after pruning: 1274


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.9 (1,1:664)  574  1.01 0.17 0.00  UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1       69   665 (33)  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   (4)   598     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1     1 
  104  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   563 
  108    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   108 
  112  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   555 
  128    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   128 
  144  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   523 
  152    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   152 
  188  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   479 
  200    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   200 
  288  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   379 
  292    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   292 
  384  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   283 
  400    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   400 
  416  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   251 
  424    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   424 
  440  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1   227 
  460    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   460 
  632  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1    34 
  640    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   640 
  648  C UCW004R_D03_BF473658Ld04P002C01C071R1_026.ab1    18 
  652    UCW004F_D03_BF473658Ld04P002C01C071F1_026.ab1   652 
Contig length: old 698, new 698

Contig length: old 698, new 698
New start: 0