No. words: 1327; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:610)  609  0.16 0.00 0.00  UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1        1   611 (52)  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1   (53)   611     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1   664 
   61    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1     8 
   69  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1   596 
  577    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1   524 
  589  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1    76 
  593    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1   540 
  601  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1    64 
  605    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1   552 
  613  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1    52 
  636    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1   583 
  640  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1    25 
  648    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1   595 
  652  C UCW018R_B08_BF473658Ld10P014E06P014E121R1_062.ab1    13 
  660    UCW018F_B08_BF473658Ld10P014E06P014E121F1_062.ab1   607 
Contig length: old 716, new 716

Contig length: old 716, new 716
New start: 0