No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:635)  635  0.00 0.00 0.00  UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1        1   636 (29)  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   (32)   636     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   668 
   40    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1     8 
   56  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   613 
   60    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1    28 
  264  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   405 
  272    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   240 
  284  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   385 
  304    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   272 
  316  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   353 
  320    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   288 
  344  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   325 
  348    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   316 
  372  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   297 
  384    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   352 
  392  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   277 
  396    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   364 
  404  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   265 
  412    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   380 
  416  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   253 
  476    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   444 
  480  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   189 
  508    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   476 
  520  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   149 
  560    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   528 
  564  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1   105 
  588    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   556 
  596  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1    73 
  608    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   576 
  612  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1    57 
  616    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   584 
  620  C UCW004R_H03_BF473658Tu01P002C01C071R1_028.ab1    49 
  664    UCW004F_H03_BF473658Tu01P002C01C071F1_028.ab1   632 
Contig length: old 697, new 697

Contig length: old 697, new 697
New start: 0