No. words: 1110; after pruning: 1084


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:595)  503  0.39 0.19 0.00  UCW004F_D04_BF473658Tu02P002C01C071F1_030.ab1       79   591 (0)  C UCW004R_D04_BF473658Tu02P002C01C071R1_030.ab1   (0)   519     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1    UCW004F_D04_BF473658Tu02P002C01C071F1_030.ab1     1 
  275  C UCW004R_D04_BF473658Tu02P002C01C071R1_030.ab1   322 
  279    UCW004F_D04_BF473658Tu02P002C01C071F1_030.ab1   279 
  311  C UCW004R_D04_BF473658Tu02P002C01C071R1_030.ab1   286 
  319    UCW004F_D04_BF473658Tu02P002C01C071F1_030.ab1   319 
  339  C UCW004R_D04_BF473658Tu02P002C01C071R1_030.ab1   258 
  405    UCW004F_D04_BF473658Tu02P002C01C071F1_030.ab1   405 
  416  C UCW004R_D04_BF473658Tu02P002C01C071R1_030.ab1   181 
  452    UCW004F_D04_BF473658Tu02P002C01C071F1_030.ab1   452 
  456  C UCW004R_D04_BF473658Tu02P002C01C071R1_030.ab1   141 
Contig length: old 596, new 596

Contig length: old 596, new 596
New start: 0