No. words: 1645; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.6 (1,1:822)  799  0.12 0.12 0.00  UCW006F_F10_BF478964As02P002G04G101F1_079.ab1        5   822 (3)  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   (0)   820     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1     1 
  341  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   484 
  349    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   349 
  357  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   468 
  365    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   365 
  385  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   440 
  393    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   393 
  409  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   416 
  413    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   413 
  465  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   360 
  477    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   477 
  485  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   340 
  505    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   505 
  509  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   316 
  525    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   525 
  529  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   296 
  545    UCW006F_F10_BF478964As02P002G04G101F1_079.ab1   545 
  549  C UCW006R_F10_BF478964As02P002G04G101R1_079.ab1   276 
Contig length: old 825, new 824

Contig length: old 824, new 824
New start: 0