No. words: 1633; after pruning: 1579


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:832)  780  0.50 0.00 0.00  UCW006F_G10_BF478964At01P002G04G101F1_072.ab1       22   821 (0)  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   (0)   812    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  392 nodes

 198 str. conn. components

Path
    1    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1     1 
  270  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   564 
  274    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   274 
  370  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   464 
  374    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   374 
  378  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   456 
  382    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   382 
  418  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   416 
  426    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   426 
  438  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   396 
  442    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   442 
  494  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   340 
  502    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   502 
  510  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   324 
  526    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   526 
  530  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   304 
  538    UCW006F_G10_BF478964At01P002G04G101F1_072.ab1   538 
  542  C UCW006R_G10_BF478964At01P002G04G101R1_072.ab1   292 
Contig length: old 833, new 833

Contig length: old 833, new 833
New start: 0