No. words: 1628; after pruning: 1588


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.6 (1,1:825)  782  0.13 0.00 0.00  UCW006F_H10_BF478964At02P002G04G101F1_080.ab1        1   794 (0)  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   (8)   826    33 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   834 
   12    UCW006F_H10_BF478964At02P002G04G101F1_080.ab1     4 
  375  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   460 
  379    UCW006F_H10_BF478964At02P002G04G101F1_080.ab1   371 
  399  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   436 
  403    UCW006F_H10_BF478964At02P002G04G101F1_080.ab1   395 
  423  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   412 
  431    UCW006F_H10_BF478964At02P002G04G101F1_080.ab1   423 
  463  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   372 
  467    UCW006F_H10_BF478964At02P002G04G101F1_080.ab1   459 
  503  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   332 
  527    UCW006F_H10_BF478964At02P002G04G101F1_080.ab1   519 
  531  C UCW006R_H10_BF478964At02P002G04G101R1_080.ab1   304 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0