No. words: 1648; after pruning: 1594


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 17.2 (1,1:834)  789  0.25 0.12 0.00  UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1       20   827 (4)  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   (0)   817     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1     1 
  364  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   473 
  372    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   372 
  376  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   461 
  384    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   384 
  392  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   445 
  396    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   396 
  432  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   405 
  444    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   444 
  464  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   373 
  480    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   480 
  488  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   349 
  520    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   520 
  524  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   313 
  532    UCW006F_B09_BF478964Ld02P002G04G101F1_073.ab1   532 
  536  C UCW006R_B09_BF478964Ld02P002G04G101R1_073.ab1   301 
Contig length: old 835, new 836

Contig length: old 836, new 836
New start: 0