No. words: 1661; after pruning: 1579


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.2 (1,1:827)  805  0.49 0.00 0.00  UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1        1   822 (0)  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   (11)   828     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   839 
   15    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1     4 
  378  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   462 
  386    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   375 
  406  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   434 
  410    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   399 
  418  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   422 
  422    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   411 
  430  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   410 
  434    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   423 
  458  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   382 
  466    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   455 
  474  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   366 
  482    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   471 
  486  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   354 
  498    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   487 
  502  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   338 
  534    UCW006F_C09_BF478964Ld03P002G04G101F1_066.ab1   523 
  538  C UCW006R_C09_BF478964Ld03P002G04G101R1_066.ab1   302 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0