No. words: 1062; after pruning: 1036


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:833)  218  0.44 0.00 0.44  UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1       17   244 (0)  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   (0)   818   592 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1     1 
  148  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   687 
  152    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1   152 
  156  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   679 
  164    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1   164 
  168  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   667 
  184    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1   185 
  192  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   643 
  200    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1   201 
  204  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   631 
  208    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1   209 
  220  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   615 
  224    UCW006F_D09_BF478964Ld04P002G04G101F1_074.ab1   225 
  232  C UCW006R_D09_BF478964Ld04P002G04G101R1_074.ab1   603 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0