No. words: 1640; after pruning: 1600


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.9 (1,1:828)  796  0.12 0.00 0.00  UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1       12   821 (1)  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   (0)   818     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1     1 
  357  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   473 
  365    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   365 
  409  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   421 
  413    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   413 
  441  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   389 
  449    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   449 
  465  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   365 
  473    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   473 
  485  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   345 
  493    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   493 
  497  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   333 
  657    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   657 
  661  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1   169 
  805    UCW006F_E09_BF478964Ld05P002G04G101F1_067.ab1   805 
  813  C UCW006R_E09_BF478964Ld05P002G04G101R1_067.ab1    17 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0