No. words: 1638; after pruning: 1584


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.4 (1,1:820)  793  0.25 0.00 0.00  UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1       13   820 (9)  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   (0)   809     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1     1 
  262  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   560 
  266    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   266 
  358  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   464 
  366    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   366 
  386  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   436 
  390    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   390 
  410  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   412 
  418    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   418 
  458  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   364 
  478    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   478 
  486  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   336 
  490    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   490 
  502  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   320 
  518    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   518 
  522  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   300 
  610    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   610 
  614  C UCW006R_B10_BF478964Ld10P002G04G101R1_077.ab1   208 
  806    UCW006F_B10_BF478964Ld10P002G04G101F1_077.ab1   806 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0