No. words: 1535; after pruning: 1495


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1342)  182  1.56 0.00 0.00  UCW004F_A06_BG274965As01P002G01G071F1_037.ab1      554   745 (0)  C UCW004R_A06_BG274965As01P002G01G071R1_037.ab1   (0)   790   599 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    UCW004F_A06_BG274965As01P002G01G071F1_037.ab1     1 
  638  C UCW004R_A06_BG274965As01P002G01G071R1_037.ab1   706 
  642    UCW004F_A06_BG274965As01P002G01G071F1_037.ab1   642 
  670  C UCW004R_A06_BG274965As01P002G01G071R1_037.ab1   674 
  682    UCW004F_A06_BG274965As01P002G01G071F1_037.ab1   682 
  686  C UCW004R_A06_BG274965As01P002G01G071R1_037.ab1   658 
  694    UCW004F_A06_BG274965As01P002G01G071F1_037.ab1   694 
  698  C UCW004R_A06_BG274965As01P002G01G071R1_037.ab1   646 
  714    UCW004F_A06_BG274965As01P002G01G071F1_037.ab1   714 
  722  C UCW004R_A06_BG274965As01P002G01G071R1_037.ab1   622 
Contig length: old 1343, new 1343

Contig length: old 1343, new 1343
New start: 0