No. words: 1607; after pruning: 1567


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:1371)  222  1.27 0.00 0.42  UCW004F_E06_BG274965As02P002G01G071F1_039.ab1      524   759 (0)  C UCW004R_E06_BG274965As02P002G01G071R1_039.ab1   (0)   848   614 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1    UCW004F_E06_BG274965As02P002G01G071F1_039.ab1     1 
  608  C UCW004R_E06_BG274965As02P002G01G071R1_039.ab1   765 
  612    UCW004F_E06_BG274965As02P002G01G071F1_039.ab1   612 
  636  C UCW004R_E06_BG274965As02P002G01G071R1_039.ab1   737 
  640    UCW004F_E06_BG274965As02P002G01G071F1_039.ab1   640 
  656  C UCW004R_E06_BG274965As02P002G01G071R1_039.ab1   717 
  664    UCW004F_E06_BG274965As02P002G01G071F1_039.ab1   664 
  668  C UCW004R_E06_BG274965As02P002G01G071R1_039.ab1   705 
  737    UCW004F_E06_BG274965As02P002G01G071F1_039.ab1   737 
  741  C UCW004R_E06_BG274965As02P002G01G071R1_039.ab1   632 
Contig length: old 1372, new 1372

Contig length: old 1372, new 1372
New start: 0