No. words: 1513; after pruning: 1473


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.5 (1,1:1271)  215  2.10 0.00 0.42  UCW004F_A05_BG274965Ld01P002G01G071F1_033.ab1      544   781 (0)  C UCW004R_A05_BG274965Ld01P002G01G071R1_033.ab1   (3)   729   493 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1    UCW004F_A05_BG274965Ld01P002G01G071F1_033.ab1     1 
  641  C UCW004R_A05_BG274965Ld01P002G01G071R1_033.ab1   632 
  651    UCW004F_A05_BG274965Ld01P002G01G071F1_033.ab1   651 
  663  C UCW004R_A05_BG274965Ld01P002G01G071R1_033.ab1   610 
  671    UCW004F_A05_BG274965Ld01P002G01G071F1_033.ab1   671 
  675  C UCW004R_A05_BG274965Ld01P002G01G071R1_033.ab1   598 
  691    UCW004F_A05_BG274965Ld01P002G01G071F1_033.ab1   691 
  695  C UCW004R_A05_BG274965Ld01P002G01G071R1_033.ab1   578 
  723    UCW004F_A05_BG274965Ld01P002G01G071F1_033.ab1   723 
  727  C UCW004R_A05_BG274965Ld01P002G01G071R1_033.ab1   546 
Contig length: old 1272, new 1272

Contig length: old 1272, new 1272
New start: 0