No. words: 1405; after pruning: 1365


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1202)  194  0.49 0.00 0.49  UCW004F_F05_BG274965Ld06P002G01G071F1_043.ab1      462   664 (0)  C UCW004R_F05_BG274965Ld06P002G01G071R1_043.ab1   (0)   741   540 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    UCW004F_F05_BG274965Ld06P002G01G071F1_043.ab1     1 
  511  C UCW004R_F05_BG274965Ld06P002G01G071R1_043.ab1   693 
  520    UCW004F_F05_BG274965Ld06P002G01G071F1_043.ab1   520 
  592  C UCW004R_F05_BG274965Ld06P002G01G071R1_043.ab1   612 
  604    UCW004F_F05_BG274965Ld06P002G01G071F1_043.ab1   604 
  612  C UCW004R_F05_BG274965Ld06P002G01G071R1_043.ab1   592 
  628    UCW004F_F05_BG274965Ld06P002G01G071F1_043.ab1   628 
  632  C UCW004R_F05_BG274965Ld06P002G01G071R1_043.ab1   572 
Contig length: old 1203, new 1203

Contig length: old 1203, new 1203
New start: 0