No. words: 1446; after pruning: 1406


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:1276)  164  0.59 0.00 0.00  UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1      549   717 (0)  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   (0)   729   561 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1     1 
  588  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   690 
  592    UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1   592 
  608  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   670 
  612    UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1   612 
  640  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   638 
  659    UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1   659 
  667  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   611 
  671    UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1   671 
  675  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   603 
  691    UCW004F_G05_BG274965Ld07P002G01G071F1_036.ab1   691 
  695  C UCW004R_G05_BG274965Ld07P002G01G071R1_036.ab1   583 
Contig length: old 1277, new 1277

Contig length: old 1277, new 1277
New start: 0