No. words: 1453; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:1312)  134  1.43 0.00 0.00  UCW004F_H05_BG274965Tu01P002G01G071F1_044.ab1      516   655 (0)  C UCW004R_H05_BG274965Tu01P002G01G071R1_044.ab1   (0)   798   659 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1    UCW004F_H05_BG274965Tu01P002G01G071F1_044.ab1     1 
  618  C UCW004R_H05_BG274965Tu01P002G01G071R1_044.ab1   696 
  622    UCW004F_H05_BG274965Tu01P002G01G071F1_044.ab1   622 
  646  C UCW004R_H05_BG274965Tu01P002G01G071R1_044.ab1   668 
Contig length: old 1313, new 1313

Contig length: old 1313, new 1313
New start: 0