No. words: 1524; after pruning: 1484


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:1356)  164  0.60 0.00 0.00  UCW004F_D06_BG274965Tu02P002G01G071F1_046.ab1      564   730 (0)  C UCW004R_D06_BG274965Tu02P002G01G071R1_046.ab1   (0)   794   628 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    UCW004F_D06_BG274965Tu02P002G01G071F1_046.ab1     1 
  643  C UCW004R_D06_BG274965Tu02P002G01G071R1_046.ab1   715 
  647    UCW004F_D06_BG274965Tu02P002G01G071F1_046.ab1   647 
  675  C UCW004R_D06_BG274965Tu02P002G01G071R1_046.ab1   683 
  687    UCW004F_D06_BG274965Tu02P002G01G071F1_046.ab1   687 
  691  C UCW004R_D06_BG274965Tu02P002G01G071R1_046.ab1   667 
  703    UCW004F_D06_BG274965Tu02P002G01G071F1_046.ab1   703 
  707  C UCW004R_D06_BG274965Tu02P002G01G071R1_046.ab1   651 
  723    UCW004F_D06_BG274965Tu02P002G01G071F1_046.ab1   723 
  727  C UCW004R_D06_BG274965Tu02P002G01G071R1_046.ab1   631 
Contig length: old 1357, new 1357

Contig length: old 1357, new 1357
New start: 0