No. words: 1597; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:871)  689  0.28 0.14 0.00  UCW006F_F04_BG607308As02P002B03B091F1_031.ab1       80   803 (0)  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   (0)   794    70 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1     1 
  412  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   461 
  416    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   416 
  456  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   417 
  468    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   468 
  476  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   397 
  508    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   508 
  512  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   361 
  528    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   528 
  532  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   341 
  552    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   552 
  556  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   317 
  568    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   568 
  572  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   301 
  624    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   624 
  628  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   245 
  648    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   648 
  652  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   221 
  704    UCW006F_F04_BG607308As02P002B03B091F1_031.ab1   704 
  708  C UCW006R_F04_BG607308As02P002B03B091R1_031.ab1   165 
Contig length: old 872, new 872

Contig length: old 872, new 872
New start: 0