No. words: 1717; after pruning: 1691


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.9 (1,1:886)  798  0.12 0.00 0.00  UCW006F_H04_BG607308At02P002B03B091F1_032.ab1       42   870 (0)  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   (1)   846    18 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1     1 
  367  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   521 
  371    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1   371 
  419  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   469 
  423    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1   423 
  427  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   461 
  435    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1   435 
  447  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   441 
  455    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1   455 
  467  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   421 
  471    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1   471 
  475  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   413 
  599    UCW006F_H04_BG607308At02P002B03B091F1_032.ab1   599 
  607  C UCW006R_H04_BG607308At02P002B03B091R1_032.ab1   281 
Contig length: old 887, new 887

Contig length: old 887, new 887
New start: 0