No. words: 1587; after pruning: 1561


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:895)  664  0.29 0.00 0.00  UCW006F_A03_BG607308Ld01P002B03B091F1_017.ab1      119   809 (0)  C UCW006R_A03_BG607308Ld01P002B03B091R1_017.ab1   (0)   778    88 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    UCW006F_A03_BG607308Ld01P002B03B091F1_017.ab1     1 
  414  C UCW006R_A03_BG607308Ld01P002B03B091R1_017.ab1   483 
  426    UCW006F_A03_BG607308Ld01P002B03B091F1_017.ab1   426 
  434  C UCW006R_A03_BG607308Ld01P002B03B091R1_017.ab1   463 
  438    UCW006F_A03_BG607308Ld01P002B03B091F1_017.ab1   438 
  474  C UCW006R_A03_BG607308Ld01P002B03B091R1_017.ab1   423 
  486    UCW006F_A03_BG607308Ld01P002B03B091F1_017.ab1   486 
  490  C UCW006R_A03_BG607308Ld01P002B03B091R1_017.ab1   407 
Contig length: old 896, new 896

Contig length: old 896, new 896
New start: 0