No. words: 1787; after pruning: 1761


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:929)  813  0.00 0.35 0.12  UCW006F_C03_BG607308Ld03P002B03B091F1_018.ab1       50   905 (0)  C UCW006R_C03_BG607308Ld03P002B03B091R1_018.ab1   (0)   882    25 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  416 nodes

 210 str. conn. components

Path
    1    UCW006F_C03_BG607308Ld03P002B03B091F1_018.ab1     1 
  400  C UCW006R_C03_BG607308Ld03P002B03B091R1_018.ab1   532 
  416    UCW006F_C03_BG607308Ld03P002B03B091F1_018.ab1   416 
  432  C UCW006R_C03_BG607308Ld03P002B03B091R1_018.ab1   500 
  460    UCW006F_C03_BG607308Ld03P002B03B091F1_018.ab1   460 
  472  C UCW006R_C03_BG607308Ld03P002B03B091R1_018.ab1   460 
  508    UCW006F_C03_BG607308Ld03P002B03B091F1_018.ab1   508 
  524  C UCW006R_C03_BG607308Ld03P002B03B091R1_018.ab1   408 
Contig length: old 930, new 931

Contig length: old 931, new 931
New start: 0