No. words: 1776; after pruning: 1750


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:918)  816  0.23 0.12 0.12  UCW006F_E03_BG607308Ld05P002B03B091F1_019.ab1       48   904 (0)  C UCW006R_E03_BG607308Ld05P002B03B091R1_019.ab1   (0)   872    16 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  416 nodes

 210 str. conn. components

Path
    1    UCW006F_E03_BG607308Ld05P002B03B091F1_019.ab1     1 
  331  C UCW006R_E03_BG607308Ld05P002B03B091R1_019.ab1   590 
  335    UCW006F_E03_BG607308Ld05P002B03B091F1_019.ab1   335 
  435  C UCW006R_E03_BG607308Ld05P002B03B091R1_019.ab1   486 
  459    UCW006F_E03_BG607308Ld05P002B03B091F1_019.ab1   459 
  467  C UCW006R_E03_BG607308Ld05P002B03B091R1_019.ab1   454 
  479    UCW006F_E03_BG607308Ld05P002B03B091F1_019.ab1   479 
  511  C UCW006R_E03_BG607308Ld05P002B03B091R1_019.ab1   410 
  523    UCW006F_E03_BG607308Ld05P002B03B091F1_019.ab1   523 
  539  C UCW006R_E03_BG607308Ld05P002B03B091R1_019.ab1   382 
Contig length: old 919, new 920

Contig length: old 920, new 920
New start: 0