No. words: 1590; after pruning: 1564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:884)  680  0.14 0.00 0.00  UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1       54   758 (0)  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   (0)   832   128 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1     1 
  261  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   625 
  265    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   265 
  269  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   617 
  281    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   281 
  341  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   545 
  345    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   345 
  377  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   509 
  381    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   381 
  385  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   501 
  393    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   393 
  397  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   489 
  401    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   401 
  413  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   473 
  517    UCW006F_F03_BG607308Ld06P002B03B091F1_027.ab1   517 
  521  C UCW006R_F03_BG607308Ld06P002B03B091R1_027.ab1   365 
Contig length: old 885, new 885

Contig length: old 885, new 885
New start: 0