No. words: 1505; after pruning: 1479


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:896)  584  0.16 0.00 0.00  UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1      145   752 (0)  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   (0)   753   146 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1     1 
  172  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   726 
  182    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   182 
  398  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   500 
  410    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   410 
  414  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   484 
  418    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   418 
  422  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   476 
  430    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   430 
  438  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   460 
  442    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   442 
  446  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   452 
  450    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   450 
  466  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   432 
  574    UCW006F_H03_BG607308Ld08P002B03B091F1_028.ab1   574 
  578  C UCW006R_H03_BG607308Ld08P002B03B091R1_028.ab1   320 
Contig length: old 897, new 897

Contig length: old 897, new 897
New start: 0