No. words: 1468; after pruning: 1442


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:1031)  424  0.46 0.00 0.00  UCW006F_A04_BG607308Ld09P002B03B091F1_021.ab1      278   713 (0)  C UCW006R_A04_BG607308Ld09P002B03B091R1_021.ab1   (0)   755   320 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1    UCW006F_A04_BG607308Ld09P002B03B091F1_021.ab1     1 
  504  C UCW006R_A04_BG607308Ld09P002B03B091R1_021.ab1   529 
  536    UCW006F_A04_BG607308Ld09P002B03B091F1_021.ab1   536 
  544  C UCW006R_A04_BG607308Ld09P002B03B091R1_021.ab1   489 
  700    UCW006F_A04_BG607308Ld09P002B03B091F1_021.ab1   700 
  708  C UCW006R_A04_BG607308Ld09P002B03B091R1_021.ab1   325 
Contig length: old 1032, new 1032

Contig length: old 1032, new 1032
New start: 0