No. words: 1670; after pruning: 1644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:923)  724  0.00 0.00 0.00  UCW006F_B04_BG607308Ld10P002B03B091F1_029.ab1       94   839 (0)  C UCW006R_B04_BG607308Ld10P002B03B091R1_029.ab1   (0)   831    86 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1    UCW006F_B04_BG607308Ld10P002B03B091F1_029.ab1     1 
  341  C UCW006R_B04_BG607308Ld10P002B03B091R1_029.ab1   584 
  349    UCW006F_B04_BG607308Ld10P002B03B091F1_029.ab1   349 
  409  C UCW006R_B04_BG607308Ld10P002B03B091R1_029.ab1   516 
  413    UCW006F_B04_BG607308Ld10P002B03B091F1_029.ab1   413 
  441  C UCW006R_B04_BG607308Ld10P002B03B091R1_029.ab1   484 
  457    UCW006F_B04_BG607308Ld10P002B03B091F1_029.ab1   457 
  469  C UCW006R_B04_BG607308Ld10P002B03B091R1_029.ab1   456 
  521    UCW006F_B04_BG607308Ld10P002B03B091F1_029.ab1   521 
  529  C UCW006R_B04_BG607308Ld10P002B03B091R1_029.ab1   396 
Contig length: old 924, new 924

Contig length: old 924, new 924
New start: 0