No. words: 1294; after pruning: 1268


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:867)  410  0.00 0.24 0.00  UCW006F_C04_BG607308Tu01P002B03B091F1_022.ab1      168   592 (0)  C UCW006R_C04_BG607308Tu01P002B03B091R1_022.ab1   (0)   702   277 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1    UCW006F_C04_BG607308Tu01P002B03B091F1_022.ab1     1 
  340  C UCW006R_C04_BG607308Tu01P002B03B091R1_022.ab1   529 
  348    UCW006F_C04_BG607308Tu01P002B03B091F1_022.ab1   348 
  360  C UCW006R_C04_BG607308Tu01P002B03B091R1_022.ab1   509 
  364    UCW006F_C04_BG607308Tu01P002B03B091F1_022.ab1   364 
  376  C UCW006R_C04_BG607308Tu01P002B03B091R1_022.ab1   493 
  396    UCW006F_C04_BG607308Tu01P002B03B091F1_022.ab1   396 
  400  C UCW006R_C04_BG607308Tu01P002B03B091R1_022.ab1   469 
  536    UCW006F_C04_BG607308Tu01P002B03B091F1_022.ab1   536 
  544  C UCW006R_C04_BG607308Tu01P002B03B091R1_022.ab1   325 
Contig length: old 868, new 868

Contig length: old 868, new 868
New start: 0