No. words: 1707; after pruning: 1681


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   15    0.0 14.1 (1,1:823)  777  0.00 0.25 0.00  BE352587At01P103B01P103C071F1_047.ab1        1   808 (37)  C BE352587At01P103B01P103C071R1_047.ab1   (37)   825    16 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
15       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C BE352587At01P103B01P103C071R1_047.ab1   862 
   52    BE352587At01P103B01P103C071F1_047.ab1    14 
  135  C BE352587At01P103B01P103C071R1_047.ab1   727 
  155    BE352587At01P103B01P103C071F1_047.ab1   117 
  179  C BE352587At01P103B01P103C071R1_047.ab1   683 
  187    BE352587At01P103B01P103C071F1_047.ab1   149 
  195  C BE352587At01P103B01P103C071R1_047.ab1   667 
  211    BE352587At01P103B01P103C071F1_047.ab1   173 
  271  C BE352587At01P103B01P103C071R1_047.ab1   591 
  307    BE352587At01P103B01P103C071F1_047.ab1   269 
  383  C BE352587At01P103B01P103C071R1_047.ab1   479 
  511    BE352587At01P103B01P103C071F1_047.ab1   473 
  663  C BE352587At01P103B01P103C071R1_047.ab1   199 
  743    BE352587At01P103B01P103C071F1_047.ab1   705 
  747  C BE352587At01P103B01P103C071R1_047.ab1   115 
  755    BE352587At01P103B01P103C071F1_047.ab1   717 
  759  C BE352587At01P103B01P103C071R1_047.ab1   103 
  799    BE352587At01P103B01P103C071F1_047.ab1   761 
  807  C BE352587At01P103B01P103C071R1_047.ab1    55 
  831    BE352587At01P103B01P103C071F1_047.ab1   793 
Contig length: old 883, new 883

Contig length: old 883, new 884
New start: 0 
I Change at: 66; seg lengths: entry 1, contig 0