No. words: 1674; after pruning: 1648


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 15.6 (1,1:805)  772  0.00 0.25 0.00  BE352587At02P103B01P103C071F1_045.ab1        1   801 (29)  C BE352587At02P103B01P103C071R1_045.ab1   (37)   807     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C BE352587At02P103B01P103C071R1_045.ab1   844 
   54    BE352587At02P103B01P103C071F1_045.ab1    16 
   62  C BE352587At02P103B01P103C071R1_045.ab1   783 
   73    BE352587At02P103B01P103C071F1_045.ab1    34 
  653  C BE352587At02P103B01P103C071R1_045.ab1   192 
  665    BE352587At02P103B01P103C071F1_045.ab1   626 
  669  C BE352587At02P103B01P103C071R1_045.ab1   176 
  737    BE352587At02P103B01P103C071F1_045.ab1   698 
  741  C BE352587At02P103B01P103C071R1_045.ab1   104 
  829    BE352587At02P103B01P103C071F1_045.ab1   790 
Contig length: old 868, new 869

Contig length: old 869, new 869
New start: 0