No. words: 1787; after pruning: 1747


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 16.4 (1,1:832)  787  0.12 0.37 0.00  BE352587Ld01P103C01P103C071F1_002.ab1        1   821 (55)  C BE352587Ld01P103C01P103C071R1_002.ab1   (76)   835    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C BE352587Ld01P103C01P103C071R1_002.ab1   911 
   99    BE352587Ld01P103C01P103C071F1_002.ab1    21 
  107  C BE352587Ld01P103C01P103C071R1_002.ab1   805 
  123    BE352587Ld01P103C01P103C071F1_002.ab1    45 
  153  C BE352587Ld01P103C01P103C071R1_002.ab1   759 
  157    BE352587Ld01P103C01P103C071F1_002.ab1    79 
  161  C BE352587Ld01P103C01P103C071R1_002.ab1   751 
  165    BE352587Ld01P103C01P103C071F1_002.ab1    87 
  173  C BE352587Ld01P103C01P103C071R1_002.ab1   739 
  177    BE352587Ld01P103C01P103C071F1_002.ab1    99 
  189  C BE352587Ld01P103C01P103C071R1_002.ab1   723 
  193    BE352587Ld01P103C01P103C071F1_002.ab1   115 
  361  C BE352587Ld01P103C01P103C071R1_002.ab1   551 
  389    BE352587Ld01P103C01P103C071F1_002.ab1   311 
  493  C BE352587Ld01P103C01P103C071R1_002.ab1   419 
  561    BE352587Ld01P103C01P103C071F1_002.ab1   483 
  641  C BE352587Ld01P103C01P103C071R1_002.ab1   271 
  841    BE352587Ld01P103C01P103C071F1_002.ab1   763 
  845  C BE352587Ld01P103C01P103C071R1_002.ab1    67 
  849    BE352587Ld01P103C01P103C071F1_002.ab1   771 
  866  C BE352587Ld01P103C01P103C071R1_002.ab1    45 
  882    BE352587Ld01P103C01P103C071F1_002.ab1   804 
Contig length: old 954, new 954

Contig length: old 954, new 954
New start: 0