No. words: 1813; after pruning: 1787


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:809)  779  0.25 0.12 0.00  BE352587Ld02P103B01P103C071F1_079.ab1        1   810 (91)  C BE352587Ld02P103B01P103C071R1_079.ab1   (101)   811     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C BE352587Ld02P103B01P103C071R1_079.ab1   912 
  114    BE352587Ld02P103B01P103C071F1_079.ab1    12 
  134  C BE352587Ld02P103B01P103C071R1_079.ab1   779 
  153    BE352587Ld02P103B01P103C071F1_079.ab1    51 
  157  C BE352587Ld02P103B01P103C071R1_079.ab1   756 
  161    BE352587Ld02P103B01P103C071F1_079.ab1    59 
  181  C BE352587Ld02P103B01P103C071R1_079.ab1   732 
  193    BE352587Ld02P103B01P103C071F1_079.ab1    91 
  205  C BE352587Ld02P103B01P103C071R1_079.ab1   708 
  209    BE352587Ld02P103B01P103C071F1_079.ab1   107 
  217  C BE352587Ld02P103B01P103C071R1_079.ab1   696 
  221    BE352587Ld02P103B01P103C071F1_079.ab1   119 
  237  C BE352587Ld02P103B01P103C071R1_079.ab1   676 
  241    BE352587Ld02P103B01P103C071F1_079.ab1   139 
  261  C BE352587Ld02P103B01P103C071R1_079.ab1   652 
  265    BE352587Ld02P103B01P103C071F1_079.ab1   163 
  297  C BE352587Ld02P103B01P103C071R1_079.ab1   616 
  325    BE352587Ld02P103B01P103C071F1_079.ab1   223 
  341  C BE352587Ld02P103B01P103C071R1_079.ab1   572 
  365    BE352587Ld02P103B01P103C071F1_079.ab1   263 
  485  C BE352587Ld02P103B01P103C071R1_079.ab1   428 
  509    BE352587Ld02P103B01P103C071F1_079.ab1   407 
  517  C BE352587Ld02P103B01P103C071R1_079.ab1   396 
  573    BE352587Ld02P103B01P103C071F1_079.ab1   471 
  649  C BE352587Ld02P103B01P103C071R1_079.ab1   264 
  709    BE352587Ld02P103B01P103C071F1_079.ab1   607 
  729  C BE352587Ld02P103B01P103C071R1_079.ab1   184 
  733    BE352587Ld02P103B01P103C071F1_079.ab1   631 
  749  C BE352587Ld02P103B01P103C071R1_079.ab1   164 
  817    BE352587Ld02P103B01P103C071F1_079.ab1   715 
  825  C BE352587Ld02P103B01P103C071R1_079.ab1    88 
  897    BE352587Ld02P103B01P103C071F1_079.ab1   795 
Contig length: old 1003, new 1003

Contig length: old 1003, new 1003
New start: 0