No. words: 1490; after pruning: 1464


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:704)  644  1.56 0.28 0.00  BE352587Ld03P103C01P103C071F1_017.ab1        3   705 (80)  C BE352587Ld03P103C01P103C071R1_017.ab1   (0)   705     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    BE352587Ld03P103C01P103C071F1_017.ab1     1 
  115  C BE352587Ld03P103C01P103C071R1_017.ab1   591 
  119    BE352587Ld03P103C01P103C071F1_017.ab1   119 
  203  C BE352587Ld03P103C01P103C071R1_017.ab1   503 
  207    BE352587Ld03P103C01P103C071F1_017.ab1   207 
  227  C BE352587Ld03P103C01P103C071R1_017.ab1   479 
  239    BE352587Ld03P103C01P103C071F1_017.ab1   239 
  243  C BE352587Ld03P103C01P103C071R1_017.ab1   463 
  315    BE352587Ld03P103C01P103C071F1_017.ab1   315 
  363  C BE352587Ld03P103C01P103C071R1_017.ab1   343 
  375    BE352587Ld03P103C01P103C071F1_017.ab1   375 
  391  C BE352587Ld03P103C01P103C071R1_017.ab1   315 
  423    BE352587Ld03P103C01P103C071F1_017.ab1   423 
  435  C BE352587Ld03P103C01P103C071R1_017.ab1   271 
  479    BE352587Ld03P103C01P103C071F1_017.ab1   479 
  523  C BE352587Ld03P103C01P103C071R1_017.ab1   183 
  543    BE352587Ld03P103C01P103C071F1_017.ab1   543 
Contig length: old 785, new 785

Contig length: old 785, new 786
New start: 0 
I Change at: 33; seg lengths: entry 3, contig 2