No. words: 1731; after pruning: 1691


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.2 (1,1:819)  795  0.24 0.00 0.00  BE352587Ld05P103C01P103C071F1_094.ab1        1   820 (26)  C BE352587Ld05P103C01P103C071R1_094.ab1   (65)   820     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C BE352587Ld05P103C01P103C071R1_094.ab1   885 
   71    BE352587Ld05P103C01P103C071F1_094.ab1     6 
  305  C BE352587Ld05P103C01P103C071R1_094.ab1   581 
  313    BE352587Ld05P103C01P103C071F1_094.ab1   248 
  361  C BE352587Ld05P103C01P103C071R1_094.ab1   525 
  365    BE352587Ld05P103C01P103C071F1_094.ab1   300 
  401  C BE352587Ld05P103C01P103C071R1_094.ab1   485 
  433    BE352587Ld05P103C01P103C071F1_094.ab1   368 
  505  C BE352587Ld05P103C01P103C071R1_094.ab1   381 
  533    BE352587Ld05P103C01P103C071F1_094.ab1   468 
  577  C BE352587Ld05P103C01P103C071R1_094.ab1   309 
  589    BE352587Ld05P103C01P103C071F1_094.ab1   524 
  597  C BE352587Ld05P103C01P103C071R1_094.ab1   289 
  609    BE352587Ld05P103C01P103C071F1_094.ab1   544 
  621  C BE352587Ld05P103C01P103C071R1_094.ab1   265 
  625    BE352587Ld05P103C01P103C071F1_094.ab1   560 
  633  C BE352587Ld05P103C01P103C071R1_094.ab1   253 
  637    BE352587Ld05P103C01P103C071F1_094.ab1   572 
  665  C BE352587Ld05P103C01P103C071R1_094.ab1   221 
  693    BE352587Ld05P103C01P103C071F1_094.ab1   628 
  697  C BE352587Ld05P103C01P103C071R1_094.ab1   189 
  717    BE352587Ld05P103C01P103C071F1_094.ab1   652 
  725  C BE352587Ld05P103C01P103C071R1_094.ab1   161 
  873    BE352587Ld05P103C01P103C071F1_094.ab1   808 
  877  C BE352587Ld05P103C01P103C071R1_094.ab1     9 
  881    BE352587Ld05P103C01P103C071F1_094.ab1   816 
Contig length: old 911, new 911

Contig length: old 911, new 911
New start: 0