No. words: 1807; after pruning: 1781


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.9 (1,1:820)  794  0.12 0.00 0.00  BE352587Ld06P103B01P103C071F1_071.ab1        1   818 (97)  C BE352587Ld06P103B01P103C071R1_071.ab1   (71)   821     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C BE352587Ld06P103B01P103C071R1_071.ab1   892 
   87    BE352587Ld06P103B01P103C071F1_071.ab1    16 
  151  C BE352587Ld06P103B01P103C071R1_071.ab1   742 
  163    BE352587Ld06P103B01P103C071F1_071.ab1    92 
  179  C BE352587Ld06P103B01P103C071R1_071.ab1   714 
  187    BE352587Ld06P103B01P103C071F1_071.ab1   116 
  191  C BE352587Ld06P103B01P103C071R1_071.ab1   702 
  195    BE352587Ld06P103B01P103C071F1_071.ab1   124 
  691  C BE352587Ld06P103B01P103C071R1_071.ab1   202 
  791    BE352587Ld06P103B01P103C071F1_071.ab1   720 
  799  C BE352587Ld06P103B01P103C071R1_071.ab1    94 
  871    BE352587Ld06P103B01P103C071F1_071.ab1   800 
Contig length: old 986, new 986

Contig length: old 986, new 986
New start: 0