No. words: 1552; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:587)  560  0.68 0.00 0.00  BE352587Ld07P103C01P103C071F1_090.ab1        1   588 (160)  C BE352587Ld07P103C01P103C071R1_090.ab1   (216)   588     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C BE352587Ld07P103C01P103C071R1_090.ab1   804 
  251    BE352587Ld07P103C01P103C071F1_090.ab1    35 
  255  C BE352587Ld07P103C01P103C071R1_090.ab1   550 
  279    BE352587Ld07P103C01P103C071F1_090.ab1    63 
  283  C BE352587Ld07P103C01P103C071R1_090.ab1   522 
  287    BE352587Ld07P103C01P103C071F1_090.ab1    71 
  295  C BE352587Ld07P103C01P103C071R1_090.ab1   510 
  307    BE352587Ld07P103C01P103C071F1_090.ab1    91 
  311  C BE352587Ld07P103C01P103C071R1_090.ab1   494 
  339    BE352587Ld07P103C01P103C071F1_090.ab1   123 
  343  C BE352587Ld07P103C01P103C071R1_090.ab1   462 
  391    BE352587Ld07P103C01P103C071F1_090.ab1   175 
  399  C BE352587Ld07P103C01P103C071R1_090.ab1   406 
  447    BE352587Ld07P103C01P103C071F1_090.ab1   231 
  479  C BE352587Ld07P103C01P103C071R1_090.ab1   326 
  543    BE352587Ld07P103C01P103C071F1_090.ab1   327 
  555  C BE352587Ld07P103C01P103C071R1_090.ab1   250 
  627    BE352587Ld07P103C01P103C071F1_090.ab1   411 
  639  C BE352587Ld07P103C01P103C071R1_090.ab1   166 
  695    BE352587Ld07P103C01P103C071F1_090.ab1   479 
  699  C BE352587Ld07P103C01P103C071R1_090.ab1   106 
  719    BE352587Ld07P103C01P103C071F1_090.ab1   503 
  723  C BE352587Ld07P103C01P103C071R1_090.ab1    82 
  735    BE352587Ld07P103C01P103C071F1_090.ab1   519 
  739  C BE352587Ld07P103C01P103C071R1_090.ab1    66 
  799    BE352587Ld07P103C01P103C071F1_090.ab1   583 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0