No. words: 1766; after pruning: 1740


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 17.5 (1,1:824)  797  0.00 0.12 0.00  BE352587Ld08P103C01P103C071F1_088.ab1        1   822 (69)  C BE352587Ld08P103C01P103C071R1_088.ab1   (49)   826     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1  C BE352587Ld08P103C01P103C071R1_088.ab1   875 
   55    BE352587Ld08P103C01P103C071F1_088.ab1     6 
   63  C BE352587Ld08P103C01P103C071R1_088.ab1   813 
   72    BE352587Ld08P103C01P103C071F1_088.ab1    22 
  296  C BE352587Ld08P103C01P103C071R1_088.ab1   580 
  312    BE352587Ld08P103C01P103C071F1_088.ab1   262 
  336  C BE352587Ld08P103C01P103C071R1_088.ab1   540 
  360    BE352587Ld08P103C01P103C071F1_088.ab1   310 
  584  C BE352587Ld08P103C01P103C071R1_088.ab1   292 
  592    BE352587Ld08P103C01P103C071F1_088.ab1   542 
  608  C BE352587Ld08P103C01P103C071R1_088.ab1   268 
  676    BE352587Ld08P103C01P103C071F1_088.ab1   626 
  684  C BE352587Ld08P103C01P103C071R1_088.ab1   192 
  860    BE352587Ld08P103C01P103C071F1_088.ab1   810 
Contig length: old 941, new 941

Contig length: old 941, new 941
New start: 0