No. words: 1801; after pruning: 1775


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.4 (1,1:819)  778  0.49 0.24 0.00  BE352587Ld09P103C01P103C071F1_086.ab1        1   819 (84)  C BE352587Ld09P103C01P103C071R1_086.ab1   (77)   821     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C BE352587Ld09P103C01P103C071R1_086.ab1   898 
   83    BE352587Ld09P103C01P103C071F1_086.ab1     6 
   91  C BE352587Ld09P103C01P103C071R1_086.ab1   808 
  100    BE352587Ld09P103C01P103C071F1_086.ab1    22 
  108  C BE352587Ld09P103C01P103C071R1_086.ab1   791 
  126    BE352587Ld09P103C01P103C071F1_086.ab1    48 
  202  C BE352587Ld09P103C01P103C071R1_086.ab1   697 
  210    BE352587Ld09P103C01P103C071F1_086.ab1   132 
  362  C BE352587Ld09P103C01P103C071R1_086.ab1   537 
  374    BE352587Ld09P103C01P103C071F1_086.ab1   296 
  514  C BE352587Ld09P103C01P103C071R1_086.ab1   385 
  546    BE352587Ld09P103C01P103C071F1_086.ab1   468 
  614  C BE352587Ld09P103C01P103C071R1_086.ab1   285 
  622    BE352587Ld09P103C01P103C071F1_086.ab1   544 
  630  C BE352587Ld09P103C01P103C071R1_086.ab1   269 
  642    BE352587Ld09P103C01P103C071F1_086.ab1   564 
  646  C BE352587Ld09P103C01P103C071R1_086.ab1   253 
  654    BE352587Ld09P103C01P103C071F1_086.ab1   576 
  678  C BE352587Ld09P103C01P103C071R1_086.ab1   221 
  690    BE352587Ld09P103C01P103C071F1_086.ab1   612 
  714  C BE352587Ld09P103C01P103C071R1_086.ab1   185 
  718    BE352587Ld09P103C01P103C071F1_086.ab1   640 
  726  C BE352587Ld09P103C01P103C071R1_086.ab1   173 
  730    BE352587Ld09P103C01P103C071F1_086.ab1   652 
  734  C BE352587Ld09P103C01P103C071R1_086.ab1   165 
  754    BE352587Ld09P103C01P103C071F1_086.ab1   676 
  758  C BE352587Ld09P103C01P103C071R1_086.ab1   141 
  802    BE352587Ld09P103C01P103C071F1_086.ab1   724 
  821  C BE352587Ld09P103C01P103C071R1_086.ab1    77 
  849    BE352587Ld09P103C01P103C071F1_086.ab1   771 
  868  C BE352587Ld09P103C01P103C071R1_086.ab1    30 
  888    BE352587Ld09P103C01P103C071F1_086.ab1   810 
Contig length: old 981, new 981

Contig length: old 981, new 981
New start: 0